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Volume 12; Issue 1 Suppleme
Main
BMC Bioinformatics
Volume 12; Issue 1 Suppleme
BMC Bioinformatics
Volume 12; Issue 1 Suppleme
1
The Ninth Asia Pacific Bioinformatics Conference (APBC2011)
Yi-Ping Phoebe Chen
,
Kwang-Hyun Cho
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 155 KB
Your tags:
english, 2011
2
Genome-wide discovery of missing genes in biological pathways of prokaryotes
Yong Chen
,
Fenglou Mao
,
Guojun Li
,
Ying Xu
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 2.13 MB
Your tags:
english, 2011
3
Gene-gene interaction filtering with ensemble of filters
Pengyi Yang
,
Joshua WK Ho
,
Yee Hwa Yang
,
Bing B Zhou
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 706 KB
Your tags:
english, 2011
4
Integrating multiple protein-protein interaction networks to prioritize disease genes: a Bayesian regression approach
Wangshu Zhang
,
Fengzhu Sun
,
Rui Jiang
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 676 KB
Your tags:
english, 2011
5
An efficient algorithmic approach for mass spectrometry-based disulfide connectivity determination using multi-ion analysis
William Murad
,
Rahul Singh
,
Ten-Yang Yen
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 4.35 MB
Your tags:
english, 2011
6
A clique-based method for the edit distance between unordered trees and its application to analysis of glycan structures
Daiji Fukagawa
,
Takeyuki Tamura
,
Atsuhiro Takasu
,
Etsuji Tomita
,
Tatsuya Akutsu
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 440 KB
Your tags:
english, 2011
7
An ILP solution for the gene duplication problem
Wen-Chieh Chang
,
Gordon J Burleigh
,
David F Fernández-Baca
,
Oliver Eulenstein
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 248 KB
Your tags:
english, 2011
8
Maximum likelihood models and algorithms for gene tree evolution with duplications and losses
Pawel Górecki
,
Gordon J Burleigh
,
Oliver Eulenstein
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 395 KB
Your tags:
english, 2011
9
SOMEA: self-organizing map based extraction algorithm for DNA motif identification with heterogeneous model
Nung Kion Lee
,
Dianhui Wang
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 301 KB
Your tags:
english, 2011
10
A genetic algorithm-based boolean delay model of intracellular signal transduction in inflammation
Chu Chun Kang
,
Yung Jen Chuang
,
Kai Che Tung
,
Chun Cheih Chao
,
Chuan Yi Tang
,
Shih Chi Peng
,
David Shan Hill Wong
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.10 MB
Your tags:
english, 2011
11
Enhanced stochastic optimization algorithm for finding effective multi-target therapeutics
Byung-Jun Yoon
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.02 MB
Your tags:
english, 2011
12
Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception
Xiaoning Qian
,
Byung-Jun Yoon
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 533 KB
Your tags:
english, 2011
13
Characterization and sequence prediction of structural variations inα-helix
Ashish V Tendulkar
,
Pramod P Wangikar
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 336 KB
Your tags:
english, 2011
14
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG
Suparna Mitra
,
Paul Rupek
,
Daniel C Richter
,
Tim Urich
,
Jack A Gilbert
,
Folker Meyer
,
Andreas Wilke
,
Daniel H Huson
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 3.68 MB
Your tags:
english, 2011
15
Motif-All: discovering all phosphorylation motifs
Zengyou He
,
Can Yang
,
Guangyu Guo
,
Ning Li
,
Weichuan Yu
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 378 KB
Your tags:
english, 2011
16
Modeling allosteric signal propagation using protein structure networks
Keunwan Park
,
Dongsup Kim
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.04 MB
Your tags:
english, 2011
17
Strobe sequence design for haplotype assembly
Christine Lo
,
Ali Bashir
,
Vikas Bansal
,
Vineet Bafna
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.41 MB
Your tags:
english, 2011
18
GARNET – gene set analysis with exploration of annotation relations
Kyoohyoung Rho
,
Bumjin Kim
,
Youngjun Jang
,
Sanghyun Lee
,
Taejeong Bae
,
Jihae Seo
,
Chaehwa Seo
,
Jihyun Lee
,
Hyunjung Kang
,
Ungsik Yu
,
Sunghoon Kim
,
Sanghyuk Lee
,
Wan Kyu Kim
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 5.13 MB
Your tags:
english, 2011
19
The choice of null distributions for detecting gene-gene interactions in genome-wide association studies
Can Yang
,
Xiang Wan
,
Zengyou He
,
Qiang Yang
,
Hong Xue
,
Weichuan Yu
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 553 KB
Your tags:
english, 2011
20
Reconstructing phylogeny from metabolic substrate-product relationships
Che-Wei Chang
,
Ping-Chiang Lyu
,
Masanori Arita
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 2.89 MB
Your tags:
english, 2011
21
Potent bace-1 inhibitor design using pharmacophore modeling,in silicoscreening and molecular docking studies
Shalini John
,
Sundarapandian Thangapandian
,
Sugunadevi Sakkiah
,
Keun Woo Lee
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 766 KB
Your tags:
english, 2011
22
Predicting gene expression in T cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models
Ivan G Costa
,
Helge G Roider
,
Thais G do Rego
,
Francisco AT de Carvalho
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 428 KB
Your tags:
english, 2011
23
Changed epitopes drive the antigenic drift for influenza A (H3N2) viruses
Jhang-Wei Huang
,
Jinn-Moon Yang
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 840 KB
Your tags:
english, 2011
24
A study on the flexibility of enzyme active sites
Yi-Zhong Weng
,
Darby Tien-Hao Chang
,
Yu-Feng Huang
,
Chih-Wei Lin
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 2.01 MB
Your tags:
english, 2011
25
iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis
Kai-Cheng Hsu
,
Yen-Fu Chen
,
Shen-Rong Lin
,
Jinn-Moon Yang
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.51 MB
Your tags:
english, 2011
26
Learning probabilistic models of hydrogen bond stability from molecular dynamics simulation trajectories
Igor Chikalov
,
Peggy Yao
,
Mikhail Moshkov
,
Jean-Claude Latombe
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 309 KB
Your tags:
english, 2011
27
Ligand binding site superposition and comparison based on Atomic Property Fields: identification of distant homologues, convergent evolution and PDB-wide clustering of binding sites
Maxim Totrov
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 5.75 MB
Your tags:
english, 2011
28
Integrated metabolome and transcriptome analysis of the NCI60 dataset
Gang Su
,
Charles F Burant
,
Christopher W Beecher
,
Brian D Athey
,
Fan Meng
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.07 MB
Your tags:
english, 2011
29
Query-based biclustering of gene expression data using Probabilistic Relational Models
Hui Zhao
,
Lore Cloots
,
Tim Van den Bulcke
,
Yan Wu
,
Riet De Smet
,
Valerie Storms
,
Pieter Meysman
,
Kristof Engelen
,
Kathleen Marchal
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.75 MB
Your tags:
english, 2011
30
PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach
Sayed Mohammad Ebrahim Sahraeian
,
Byung-Jun Yoon
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 600 KB
Your tags:
english, 2011
31
Interaction site prediction by structural similarity to neighboring clusters in protein-protein interaction networks
Hiroyuki Monji
,
Satoshi Koizumi
,
Tomonobu Ozaki
,
Takenao Ohkawa
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.99 MB
Your tags:
english, 2011
32
On thePATHGROUPSapproach to rapid small phylogeny
Chunfang Zheng
,
David Sankoff
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 877 KB
Your tags:
english, 2011
33
GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products
Yu Rang Park
,
Jihun Kim
,
Hye Won Lee
,
Young Jo Yoon
,
Ju Han Kim
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 185 KB
Your tags:
english, 2011
34
Coregulation of transcription factors and microRNAs in human transcriptional regulatory network
Cho-Yi Chen
,
Shui-Tein Chen
,
Chiou-Shann Fuh
,
Hsueh-Fen Juan
,
Hsuan-Cheng Huang
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 2.98 MB
Your tags:
english, 2011
35
A method for supporting retrieval of articles on protein structure analysis considering users’ intention
Riku Kyogoku
,
Ryo Fujimoto
,
Tomonobu Ozaki
,
Takenao Ohkawa
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.60 MB
Your tags:
english, 2011
36
HDX-Analyzer: a novel package for statistical analysis of protein structure dynamics
Sanmin Liu
,
Lantao Liu
,
Ugur Uzuner
,
Xin Zhou
,
Manxi Gu
,
Weibing Shi
,
Yixiang Zhang
,
Susie Y Dai
,
Joshua S Yuan
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.57 MB
Your tags:
english, 2011
37
Resolving the structure of interactomes with hierarchical agglomerative clustering
Yongjin Park
,
Joel S Bader
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 557 KB
Your tags:
english, 2011
38
Evaluation of methods for detecting conversion events in gene clusters
Giltae Song
,
Chih-Hao Hsu
,
Cathy Riemer
,
Webb Miller
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 366 KB
Your tags:
english, 2011
39
High-throughput peptide quantification using mTRAQ reagent triplex
Joo Young Yoon
,
Jeonghun Yeom
,
Heebum Lee
,
Kyutae Kim
,
Seungjin Na
,
Kunsoo Park
,
Eunok Paek
,
Cheolju Lee
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 697 KB
Your tags:
english, 2011
40
Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties
Hui-Lin Huang
,
I-Che Lin
,
Yi-Fan Liou
,
Chia-Ta Tsai
,
Kai-Ti Hsu
,
Wen-Lin Huang
,
Shinn-Jang Ho
,
Shinn-Ying Ho
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.38 MB
Your tags:
english, 2011
41
Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures
Yutaka Saito
,
Kengo Sato
,
Yasubumi Sakakibara
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 657 KB
Your tags:
english, 2011
42
Discriminative structural approaches for enzyme active-site prediction
Tsuyoshi Kato
,
Nozomi Nagano
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 444 KB
Your tags:
english, 2011
43
FPGA accelerator for protein secondary structure prediction based on the GOR algorithm
Fei Xia
,
Yong Dou
,
Guoqing Lei
,
Yusong Tan
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 345 KB
Your tags:
english, 2011
44
A regression analysis of gene expression in ES cells reveals two gene classes that are significantly different in epigenetic patterns
Sung-Joon Park
,
Kenta Nakai
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 960 KB
Your tags:
english, 2011
45
Semantically enabled and statistically supported biological hypothesis testing with tissue microarray databases
Young Soo Song
,
Chan Hee Park
,
Hee-Joon Chung
,
Hyunjung Shin
,
Jihun Kim
,
Ju Han Kim
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.87 MB
Your tags:
english, 2011
46
Repeat-aware modeling and correction of short read errors
Xiao Yang
,
Srinivas Aluru
,
Karin S Dorman
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 668 KB
Your tags:
english, 2011
47
Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads
Jorge Duitama
,
Justin Kennedy
,
Sanjiv Dinakar
,
Yözen Hernández
,
Yufeng Wu
,
Ion I Măndoiu
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 841 KB
Your tags:
english, 2011
48
IncorporatingAb Initioenergy into threading approaches for protein structure prediction
Mingfu Shao
,
Sheng Wang
,
Chao Wang
,
Xiongying Yuan
,
Shuai Cheng Li
,
Weimou Zheng
,
Dongbo Bu
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.67 MB
Your tags:
english, 2011
49
Closest string with outliers
Christina Boucher
,
Bin Ma
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.05 MB
Your tags:
english, 2011
50
A minimal descriptor of an ancestral recombinations graph
Laxmi Parida
,
Pier Francesco Palamara
,
Asif Javed
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 916 KB
Your tags:
english, 2011
51
Multi-resolution independent component analysis for high-performance tumor classification and biomarker discovery
Henry Han
,
Xiao-Li Li
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 480 KB
Your tags:
english, 2011
52
Ontology-based instance data validation for high-quality curated biological pathways
Euna Jeong
,
Masao Nagasaki
,
Kazuko Ueno
,
Satoru Miyano
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.00 MB
Your tags:
english, 2011
53
UMARS: Un-MAppable Reads Solution
Sung-Chou Li
,
Wen-Ching Chan
,
Chun-Hung Lai
,
Kuo-Wang Tsai
,
Chun-Nan Hsu
,
Yuh-Shan Jou
,
Hua-Chien Chen
,
Chun-Hong Chen
,
Wen-chang Lin
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.49 MB
Your tags:
english, 2011
54
Score regularization for peptide identification
Zengyou He
,
Hongyu Zhao
,
Weichuan Yu
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 539 KB
Your tags:
english, 2011
55
Hsp90/Cdc37 Chaperone/co-chaperone complex, a novel junction anticancer target elucidated by the mode of action of herbal drug Withaferin A
Abhinav Grover
,
Ashutosh Shandilya
,
Vibhuti Agrawal
,
Piyush Pratik
,
Divya Bhasme
,
Virendra S Bisaria
,
Durai Sundar
Journal:
BMC Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.95 MB
Your tags:
english, 2011
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